O’Keeffe, K.R., A. Simha, C.E. Mitchell, 2021.  Indirect interactions among co-infecting parasites and a microbial mutualist impact disease progression.  Proceedings of the Royal Society B.  288(1956):20211313. https://doi.org/10.1098/rspb.2021.1313


O’Keeffe, K.R., F.W. Halliday, C.D. Jones, I. Carbone, C.E. Mitchell, 2021.  Parasites, niche modification, and the host microbiome: A field survey of multiple parasites.  Molecular Ecology 30:2404-2416. https://doi.org/10.1111/mec.15892


F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2020.  Eutrophication, biodiversity loss, and species invasions modify the relationship between host and parasite richness during host community assembly.  Global Change Biology 26(9):4854-4867.  https://doi.org/10.1111/gcb.15165.  


F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2019.  Past is prologue: Host community assembly and the risk of infectious disease over time.  Ecology Letters 22(1):138-148.  https://doi.org/10.1111/ele.13176.

O’Keeffe, K.R., and C.D. Jones, 2019.  Challenges and solutions for analysing dual RNA‐seq data for non‐model host–pathogen systems.  Methods in Ecology and Evolution 10(3):401-414.  https://doi.org/10.1111/2041-210X.13135.  


F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2018.  A host immune hormone modifies parasite species interactions and epidemics: insights from a field manipulation.  Proceedings of the Royal Society B 285(1890):20182075 https://doi.org/10.1098/rspb.2018.2075.


F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2017.  Interactions among symbionts operate across scales to influence parasite epidemics.  Ecology Letters 20(10):1285–1294. http://dx.doi.org/10.1111/ele.12825.  (Winner of the 2018 Outstanding Student Paper Award from the Disease Ecology Section of the Ecological Society of America). 


O’Keeffe, K.R., I. Carbone, C.D. Jones, C.E. Mitchell, 2017.  Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants.  Current Opinion in Plant Biology 38:78–83.  https://doi.org/10.1016/j.pbi.2017.04.014