O’Keeffe, K.R., F.W. Halliday, C.D. Jones, Ignazio Carbone, C.E. Mitchell, 2020. Parasites as niche modifiers for the microbiome: A field test with multiple parasites. bioRxiv 2020.03.31.018713. (https://doi.org/10.1101/2020.03.31.018713). (PREPRINT)
F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2020. Eutrophication, biodiversity loss, and species invasions modify the relationship between host and parasite richness during host community assembly. Global Change Biology 26(9):4854-4867. (https://doi.org/10.1111/gcb.15165).
F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2019. Past is prologue: Host community assembly and the risk of infectious disease over time. Ecology Letters 22(1):138-148. (https://doi.org/10.1111/ele.13176).
O’Keeffe, K.R., and C.D. Jones, 2019. Challenges and solutions for analysing dual RNA‐seq data for non‐model host–pathogen systems. Methods in Ecology and Evolution 10(3):401-414. (https://doi.org/10.1111/2041-210X.13135).
F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2018. A host immune hormone modifies parasite species interactions and epidemics: insights from a field manipulation. Proceedings of the Royal Society B 285(1890):20182075 (https://doi.org/10.1098/rspb.2018.2075).
F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2017. Interactions among symbionts operate across scales to influence parasite epidemics. Ecology Letters 20(10):1285–1294. (http://dx.doi.org/10.1111/ele.12825). (Winner of the 2018 Outstanding Student Paper Award from the Disease Ecology Section of the Ecological Society of America).
O’Keeffe, K.R., I. Carbone, C.D. Jones, C.E. Mitchell, 2017. Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants. Current Opinion in Plant Biology 38:78–83. (https://doi.org/10.1016/j.pbi.2017.04.014).