O’Keeffe, K.R., F.W. Halliday, C.D. Jones, Ignazio Carbone, C.E. Mitchell, 2020.  Parasites as niche modifiers for the microbiome: A field test with multiple parasites.  bioRxiv 2020.03.31.018713.  (https://doi.org/10.1101/2020.03.31.018713).  (PREPRINT)


F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2020.  Eutrophication, biodiversity loss, and species invasions modify the relationship between host and parasite richness during host community assembly.  Global Change Biology 26(9):4854-4867.  (https://doi.org/10.1111/gcb.15165).  


F.W. Halliday, R.W. Heckman, P.A. Wilfahrt, C.E. Mitchell, 2019.  Past is prologue: Host community assembly and the risk of infectious disease over time.  Ecology Letters 22(1):138-148.  (https://doi.org/10.1111/ele.13176).

O’Keeffe, K.R., and C.D. Jones, 2019.  Challenges and solutions for analysing dual RNA‐seq data for non‐model host–pathogen systems.  Methods in Ecology and Evolution 10(3):401-414.  (https://doi.org/10.1111/2041-210X.13135).  


F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2018.  A host immune hormone modifies parasite species interactions and epidemics: insights from a field manipulation.  Proceedings of the Royal Society B 285(1890):20182075 (https://doi.org/10.1098/rspb.2018.2075).


F.W. Halliday, J. Umbanhowar, C.E. Mitchell, 2017.  Interactions among symbionts operate across scales to influence parasite epidemics.  Ecology Letters 20(10):1285–1294. (http://dx.doi.org/10.1111/ele.12825).  (Winner of the 2018 Outstanding Student Paper Award from the Disease Ecology Section of the Ecological Society of America). 


O’Keeffe, K.R., I. Carbone, C.D. Jones, C.E. Mitchell, 2017.  Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants.  Current Opinion in Plant Biology 38:78–83.  (https://doi.org/10.1016/j.pbi.2017.04.014).